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[EP-tech] Import problems!



Ah, cool! Thanks! All sorted on that front and added ?Export/Import Subjects?? into my checklist for migration!

Now, if I could figure out what?s up with those records I think I?m about there?

From: eprints-tech-bounces at ecs.soton.ac.uk [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of Lizz Jennings
Sent: 07 February 2017 13:54
To: eprints-tech at ecs.soton.ac.uk
Subject: Re: [EP-tech] Import problems!

Not sure on how you work on the first half of that, but there?s a helpful video on working with subject trees:

https://wiki.eprints.org/w/Training_Video:Subject_Trees

You?ll probably need to copy your subject tree from the old repository over, and then run import_subjects pointing at that file.

Lizz

--
Lizz Jennings BA MSc ACLIP MCLIP (Revalidated 2015)
Research Data Librarian (Systems)
The Library 4.10, University of Bath, Bath, BA2 7AY UK
Ext. 3570 (External 01225 383570)
E.Jennings at bath.ac.uk<mailto:E.Jennings at bath.ac.uk>
Research Data Management: http://www.bath.ac.uk/research/data


From: eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk> [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of Andrew Beeken
Sent: 07 February 2017 13:42
To: eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>
Subject: Re: [EP-tech] Import problems!

I?m back!

Progress has been made. So, I?ve tried this with clearing out the eprints table and starting the import from fresh ? success! Of a kind?

It?s imported one record; this one ? http://eprints.lincoln.ac.uk/25828. This is a complete record with related documents. Hurrah!

However there should be a total of four records imported. The import threw up some new and interesting errors:

Starting EPrints Repository.
Connecting to DB ... done.
Failed to retrieve http://eprints.lincoln.ac.uk/25934/1/1602_Global%20Goals_French_Art6Clean.docx: 401 Authorization Required
document.52811 failed to create subdataobj on document.files at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1013.
eprint.25934 failed to create subdataobj on archive.documents at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1013.
Failed to retrieve http://eprints.lincoln.ac.uk/25845/1/BehavEcol2016.pdf: 401 Authorization Required
document.52360 failed to create subdataobj on document.files at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1013.
eprint.25845 failed to create subdataobj on archive.documents at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1013.
Failed to retrieve http://eprints.lincoln.ac.uk/25940/1/25940%20Proof_APPLAN_4392.pdf: 401 Authorization Required
document.52899 failed to create subdataobj on document.files at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1013.
eprint.25940 failed to create subdataobj on archive.documents at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1013.
Number of records imported: 1
25828
Ending EPrints Repository.

Now, my interpretation of this is that it?s unable to get the documents that are not open access ? which is fine, however how can I get it to grab any protected documents? Can I provide username and password alongside the import? Also, is this likely to be why the records are not being imported correctly or is there something else here I?m misinterpreting?

Finally, looking at the repository I can access the record directly through the URL, however I can?t see anything through the browse by? view. I?ve regenerated views/abstracts and started the indexer. The search gives this error:

The Lincoln Repository has encountered an error:

The top level subject (id=jacs) for field "subjects" does not exist. The site admin probably has not run import_subjects. See the documentation for more information.

As always, any thoughts are appreciated!

Andrew

From: eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk> [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of Andrew Beeken
Sent: 06 February 2017 11:25
To: eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>
Subject: Re: [EP-tech] Import problems!

Hi all!

So, a week or so later and I?m back onto this. I?ve double verbosed it and exposed a bunch of extra debug stuff. One line in particular stands out for me on all 5 test records I?m trying to import:

Database execute debug: INSERT INTO `eprint` (`eprintid`) VALUES (?)

So? it looks like it?s not inserting anything into the database?

I?ve put the error log as well as the XML snapshot I?m trying to import up onto Google Drive here if anyone has time to take a look: https://drive.google.com/open?id=0B67FaE28LeB-Z3NZVGtRQkFsbVU

I am trying to get through this without shouting for help at every turn, I promise! ;P

Andrew


From: eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk> [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of Andrew Beeken
Sent: 01 February 2017 14:39
To: eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>
Subject: Re: [EP-tech] Import problems!

That?s interesting ? I?ll have a check although this action is only being done on a subset of 4 or 5 records, all of which are fairly recent, so I would have hoped they?d have a status! The only other alternative could possibly be missing status definitions etc? I shall take a look at bringing phrases over as well.

From: eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk> [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of John Salter
Sent: 01 February 2017 14:17
To: eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>
Subject: Re: [EP-tech] Import problems!

'ne' means 'not equal' - when comparing strings ('!=' means not equal when comparing numbers).

At a guess, something in your export doesn't have an eprint_status set (all EPrints should have this set). You may be able to find these in the database by trying something like:
mysql>  SELECT COUNT(*), eprint_status from eprint GROUP BY eprint_status;
This should result in the eprint_status values of inbox, buffer, archive and deletion, with a count next to each. Any count for 'NULL' would show where the eprint_status is not set, and therefore where the uninititalized string is on the import.

Cheers,
John

From: eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk> [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of Andrew Beeken
Sent: 01 February 2017 14:03
To: eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>
Subject: Re: [EP-tech] Import problems!

Cheers Adam,

That seems to have sorted things out. However, I have another new and interesting error!

Use of uninitialized value in string ne at /usr/share/eprints3/bin/../perl_lib/EPrints/DataSet.pm line 1090.

The line in question is:

if( $dataobj->get_value( "eprint_status" ) ne $self->{id} )

and the ne in that line is an operator if I?m not mistaken? So is this an issue with Perl running on the server?

Andrew

From: eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk> [mailto:eprints-tech-bounces at ecs.soton.ac.uk] On Behalf Of Adam Field
Sent: 01 February 2017 13:13
To: eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>
Subject: Re: [EP-tech] Import problems!

If you?ve added all your metadata fields to the new repositories configuration, you need to do:

<eprints_root>/bin/epadmin update <repositoryid>

This will update your database structure.


[isc]<http://www.jisc.ac.uk/>

Adam Field
SHERPA services analyst developer



From: <eprints-tech-bounces at ecs.soton.ac.uk<mailto:eprints-tech-bounces at ecs.soton.ac.uk>> on behalf of Andrew Beeken <anbeeken at lincoln.ac.uk<mailto:anbeeken at lincoln.ac.uk>>
Reply-To: "eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>" <eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>>
Date: Wednesday, 1 February 2017 12:43
To: "eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>" <eprints-tech at ecs.soton.ac.uk<mailto:eprints-tech at ecs.soton.ac.uk>>
Subject: [EP-tech] Import problems!

Hello all! Thanks for the pointers yesterday regarding import/export. I?m at a point where I now have exported data and am trying to import it. Initially I was getting errors relating to missing metadata fields which I?d thought I?d corrected, however I am now finding errors relating to missing SQL tables:

SQL ERROR (execute): SELECT `eprintid`,`pos`,`subjects_loc` FROM `eprint_subjects_loc` WHERE `eprintid` IN (25940)
SQL ERROR (execute): Table 'lirolem.eprint_subjects_loc' doesn't exist
DBD::mysql::st fetchrow_array failed: fetch() without execute() at /usr/share/eprints3/bin/../perl_lib/EPrints/Database.pm line 2674.
DBD::mysql::st execute failed: Table 'lirolem.eprint_creators_browse_id' doesn't exist at /usr/share/eprints3/bin/../perl_lib/EPrints/Database.pm line 3211.
SQL ERROR (execute): SELECT `eprintid`,`pos`,`creators_browse_id` FROM `eprint_creators_browse_id` WHERE `eprintid` IN (25940)
SQL ERROR (execute): Table 'lirolem.eprint_creators_browse_id' doesn't exist
DBD::mysql::st fetchrow_array failed: fetch() without execute() at /usr/share/eprints3/bin/../perl_lib/EPrints/Database.pm line 2674.

Now, my question is, do I need to do something to rebuild the tables relating to the metadata in some way prior to an import? Or is there something else I?m missing here? Maybe not all the field definitions?

Andrew

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