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[EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities
Hi all,
I think what was catching me out is that "epadmin test" will pick up
genuine issues with entities that are not defined but I was not using
the correct incantations with xmllint when I was using this to test
individual XML files.? The special incantation you need is:
xmllint --path /opt/eprints3/lib/ --loaddtd
/opt/eprints3/flavours/pub_lib/lang/en/templates/default.xml --noout
If this produces no output them your XML is valid based on the DTDs it
specifies to load. E.g. the following line in an XML file:
<!DOCTYPE html SYSTEM "entities.dtd">
So for future reference if you see an error like the one Thomas
originally described (
/usr/share/eprints/site_lib/lang/en/phrases/modified.xml: Entity: line
226: parser error : Entity 'auml' not defined ), then:
1. Check XML file references "entities.dtd" in a <!DOCTYPE after the
<?xml line.
2. Check that EPRINTS_PATH/lib/entities.dtd is present.
3. Check that the entity that the error message says is not defined is
present in EPRINTS_PATH/lib/entities.dtd. If not, this entity may have
been typo-ed.
4. Check that xmllint validates the file that error mesage complains
about using the --path, --loaddtd and --noout switches (e.g. the line
below should produce no output if valid):
??? xmllint --path /usr/share/eprints/lib/ --loaddtd
/opt/eprints3/flavours/pub_lib/lang/en/templates/default.xml
/usr/share/eprints/site_lib/lang/en/phrases/modified.xml --noout
5. If (4) shows the XML file to be valid. Check which version of LibXML
you have installed and if it is 2.0201+ then apply the appropriate patch
from:
EPrints 3.3 - https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feprints%2Feprints%2Fissues%2F511&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703639912%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=J66DlDwElebvMqlSwin%2FHRIxS7Wq1WeIru%2FSkT8rctw%3D&reserved=0
EPrints 3.4 - https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feprints%2Feprints3.4%2Fissues%2F41&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703639912%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=iKZTfky7LhMRgefYcgcswihZF%2FAbgsEn8joBM%2BifTqM%3D&reserved=0
If anyone is still having XML validation issues after this, we will have
a new problem on our hands but hopefully that won't come to pass.
Regards
David Newman
On 01/12/2020 15:07, Christopher Gutteridge wrote:
>
> This was a bit of a fiddle to make it possible to do things like
> £ é etc.? to make people's lives a little easier when
> writing the templates which are XHTML.
>
> The obvious other approach would be to preprocess them with something
> like this
>
> s/&([a-z]+);/expandentitiy($1)/ge
>
> but that would break with the wisdom that you should never parse XML
> with a regular expression.
>
>
> On 01/12/2020 14:37, David R Newman via Eprints-tech wrote:
>>
>> Hi all,
>>
>> I have been blind.? EPrints (at least latest 3.4) already has an
>> entities.dtd in lib/ and is already used in most of the standard XML
>> template, phrase, etc. files.? I think the problem is that it does
>> not link in properly in most if not all cases.? So I will investigate
>> how that can be done better to avoid encountering undefined entities
>> errors.
>>
>> Regards
>>
>> David Newman
>>
>> On 01/12/2020 14:26, martin.braendle at uzh.ch wrote:
>>> *CAUTION:* This e-mail originated outside the University of
>>> Southampton.
>>>
>>> The entities file we have here has the following preamble
>>>
>>> <!-- Portions (C) International Organization for Standardization 1986
>>> ? ? ?Permission to copy in any form is granted for use with
>>> ? ? ?conforming SGML systems and applications as defined in
>>> ? ? ?ISO 8879, provided this notice is included in all copies.
>>> -->
>>>
>>> and contains more than 500 lines.
>>>
>>> It stems most probably from here:
>>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.w3.org%2FTR%2FREC-html40-971218%2Fsgml%2Fentities.html&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703639912%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=iu9eTMSmbCBkDIDwy8lptFDR828z3A4ykpTc0d19daw%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.w3.org%2FTR%2FREC-html40-971218%2Fsgml%2Fentities.html&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703639912%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=iu9eTMSmbCBkDIDwy8lptFDR828z3A4ykpTc0d19daw%3D&reserved=0>
>>>
>>> Kind regards,
>>>
>>> Martin
>>>
>>> --
>>> Dr. Martin Br?ndle
>>> Zentrale Informatik
>>> Universit?t Z?rich
>>> Stampfenbachstr. 73
>>> CH-8006 Z?rich
>>>
>>> Inactive hide details for "David R Newman" ---01/12/2020
>>> 15:19:06---Hi all, EPrints 3.4 has has the patch applied for issues
>>> wi"David R Newman" ---01/12/2020 15:19:06---Hi all, EPrints 3.4 has
>>> has the patch applied for issues with newer versions of
>>>
>>> Von: "David R Newman" <drn at ecs.soton.ac.uk>
>>> An: eprints-tech at ecs.soton.ac.uk
>>> Kopie: th.lauke at arcor.de, martin.braendle at uzh.ch
>>> Datum: 01/12/2020 15:19
>>> Betreff: Re: Antwort: Re: [EP-tech] perl module update introduced
>>> some trouble with entities
>>>
>>> ------------------------------------------------------------------------
>>>
>>>
>>>
>>> Hi all,
>>>
>>> EPrints 3.4 has has the patch applied for issues with newer versions
>>> of LibXML and EPrints 3.4.2 onwards should have this particular
>>> issue resolved. ?Regarding special characters, I will look into
>>> producing (or hopefully finding) an entities.dtd for all the special
>>> characters that EPrints repositories may want use and then update
>>> standard template and phrase files to use this. ?In fact it is
>>> probably even worth doing this for citation and workflow files as
>>> well. ?I have created an issue for EPrints 3.4 to address this:
>>>
>>> _https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feprints%2Feprints3.4%2Fissues%2F112_&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703639912%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=H%2FMWdWok6CibcXpjPZkMB4t4XHcMuULop51jDsNEA7g%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feprints%2Feprints3.4%2Fissues%2F112&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703639912%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=qXBze6oepInLS3ehJTUqk9kD29jlWUS1HXzcXsySuX8%3D&reserved=0>
>>>
>>>
>>> Regards
>>>
>>> David Newman
>>>
>>> On 01/12/2020 13:35, _martin.braendle at uzh.ch_
>>> <mailto:martin.braendle at uzh.ch>?wrote:
>>>
>>> *CAUTION:*?This e-mail originated outside the University of
>>> Southampton.
>>>
>>> Hi Thomas,
>>>
>>> there should be ?an entities.dtd file in [eprints_root]/lib/,
>>> maybe this is missing or entries are missing in it?
>>>
>>> Also a phrase file should mention that in the
>>>
>>> <!DOCTYPE phrases SYSTEM "entities.dtd">
>>>
>>> definition right at the beginning after the XML declaration.
>>>
>>> Kind regards,
>>>
>>> Martin
>>>
>>> --
>>> Dr. Martin Br?ndle
>>> Zentrale Informatik
>>> Universit?t Z?rich
>>> Stampfenbachstr. 73
>>> CH-8006 Z?rich
>>>
>>>
>>> Inactive hide details for "David R Newman via Eprints-tech"
>>> ---01/12/2020 14:24:14---Hi Thomas, Named HTML entities are not
>>> sup"David R Newman via Eprints-tech" ---01/12/2020 14:24:14---Hi
>>> Thomas, Named HTML entities are not supported in XML you need to
>>> use the decimal
>>>
>>> Von: "David R Newman via Eprints-tech"
>>> _<eprints-tech at ecs.soton.ac.uk>_
>>> <mailto:eprints-tech at ecs.soton.ac.uk>
>>> An: _<eprints-tech at ecs.soton.ac.uk>_
>>> <mailto:eprints-tech at ecs.soton.ac.uk>, _<th.lauke at arcor.de>_
>>> <mailto:th.lauke at arcor.de>
>>> Datum: 01/12/2020 14:24
>>> Betreff: Re: [EP-tech] perl module update introduced some
>>> trouble with entities
>>> Gesendet von: _<eprints-tech-bounces at ecs.soton.ac.uk>_
>>> <mailto:eprints-tech-bounces at ecs.soton.ac.uk>
>>>
>>> ------------------------------------------------------------------------
>>>
>>>
>>>
>>> Hi Thomas,
>>>
>>> Named HTML entities are not supported in XML you need to use the
>>> decimal code XML entity for ä which is ä
>>>
>>> This is the same as needing to replace things like & and
>>> © with their equivalent decimal code XML entities.
>>>
>>> Regards
>>>
>>> David Newman
>>>
>>> On 01/12/2020 12:00, th.lauke--- via Eprints-tech wrote:
>>>
>>>
>>> CAUTION: This e-mail originated outside the University of
>>> Southampton.
>>>
>>> Hi all,
>>>
>>> any hint where to start digging for reason(s) after following error:
>>> Failed to parse XML file:
>>> /usr/share/eprints/site_lib/lang/en/phrases/modified.xml:
>>> Entity: line 226: parser error : Entity 'auml' not defined
>>>
>>> This error occurs after updating some perl modules ... :(
>>>
>>> Is the 'bad' module already known?
>>> What is more effective: Fixing the module (version) or the
>>> phrase file?
>>>
>>> Thanks for any idea in advance
>>> Thomas
>>>
>>> *** Options:
>>> _http://mailman.ecs.soton.ac.uk/mailman/listinfo/eprints-tech_
>>> <http://mailman.ecs.soton.ac.uk/mailman/listinfo/eprints-tech>
>>> *** Archive:
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>>> *** EPrints community wiki:
>>> _https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwiki.eprints.org%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=vKTiKjQemQzdGEpr7mp0ANoad2tDUoJNBgQLisU6okw%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwiki.eprints.org%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=vKTiKjQemQzdGEpr7mp0ANoad2tDUoJNBgQLisU6okw%3D&reserved=0>
>>>
>>>
>>> Virus-free. _https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com_%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=EnbcnfJbuwkzNZLtB9%2B1Kb4o8DGAPYR4D9YcfgDN4Zk%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com%2Femail-signature%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Demailclient&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=z7cGjE51CsI7IrNWDJmTFYRFtmiMVxBlaJMbo7pbhqk%3D&reserved=0>
>>>
>>> *** Options:
>>> _http://mailman.ecs.soton.ac.uk/mailman/listinfo/eprints-tech_
>>> <http://mailman.ecs.soton.ac.uk/mailman/listinfo/eprints-tech>
>>> *** Archive: _https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.eprints.org%2Ftech.php%2F_&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=aU2TwKKNpsPDprWiEycl0QFCp5JDgHMz419yItTYbIo%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.eprints.org%2Ftech.php%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=97Q6PxoacGfFw9PwHuWpj4DnRvcVRXo%2FPemNMcDanPg%3D&reserved=0>
>>> *** EPrints community wiki: _https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwiki.eprints.org%2F_&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=q5jvyoAf8E1JkL4c32ngp5Sj%2F%2BqKTQdZQnnSoOKjscY%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwiki.eprints.org%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=vKTiKjQemQzdGEpr7mp0ANoad2tDUoJNBgQLisU6okw%3D&reserved=0>
>>>
>>>
>>>
>>> Virus-free. _https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com_%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=EnbcnfJbuwkzNZLtB9%2B1Kb4o8DGAPYR4D9YcfgDN4Zk%3D&reserved=0
>>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com%2Femail-signature%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Demailclient&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=z7cGjE51CsI7IrNWDJmTFYRFtmiMVxBlaJMbo7pbhqk%3D&reserved=0>
>>>
>>>
>>>
>>
>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com%2Femail-signature%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Demailclient&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703649868%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=z7cGjE51CsI7IrNWDJmTFYRFtmiMVxBlaJMbo7pbhqk%3D&reserved=0>
>> Virus-free. https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com%2F&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703659824%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=q9w4Te8slgkem0KTvfvUq%2BI6j%2BUInopUp5xQ%2BVm6NV0%3D&reserved=0
>> <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.avg.com%2Femail-signature%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Demailclient&data=04%7C01%7C%7C759fb7c1aaa14d9bbfef08d8961d7e77%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424400703659824%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=6tENiyxlBzQtb3upptobr2tOQbc74UpvLxwG53FtGbo%3D&reserved=0>
>>
>>
>> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
>>
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> --
> Christopher Gutteridge<totl at soton.ac.uk>
> You should read our team blog athttp://blog.soton.ac.uk/webteam/
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