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[EP-tech] Generate abstract by item type
Yuri is right, I did not include the -B, which I used when I tested this
myself.? Also, I forgot that you could use -N to remove the column name,
(save needing the "| tail -n +2").? As you have put the MySQL command in
backticks (`), this will effectively remove new lines, so there is no
need to include the "GROUP_CONCAT(eprintid SEPARATOR ' ')" you can just
use eprintid, so the following will do the job assuming the eprint type
cartographic is correct:
./generate_abstracts digimap `mysql -u username -p repopassword eprints?
-N -B? -e "SELECT eprintid FROM eprint WHERE type = 'cartographic' AND
eprint_status = 'archive';"`
On 07/07/2022 7:43 am, Yuri via Eprints-tech wrote:
> *CAUTION:* This e-mail originated outside the University of Southampton.
>
> I would first run:
>
> mysql -u username -p repopassword eprints -e "SELECT eprintid FROM
> eprint WHERE type = 'cartographic' AND eprint_status = 'archive';" |
> tail -n +2
>
> to see if the output is ok (should return a list of pids separated by
> spaces. Then yes, it should be it. Beware that if the password
> contains some characters interpreted by bash, maybe some escaping
> could be necessary.
>
> Note: you've to do it because the format of the command output is:
>
> +----------+
> | eprintid |
> +----------+
> |???? XXXX |
>
> ...
>
> +----------+
>
> so you will not get the list separated by a space. Is this correct,
> David? Here you can find some hint, but you can use a editor to get
> the list of eprintids to get this format:
>
> XXXX ZZZZ WWWW
>
> adding -N -B remove the extra characters from the output (|, headers)
> and you can use group_concat to get all in one line:
>
> mysql -u username -p repopassword eprints? -N -B? -e "SELECT
> GROUP_CONCAT(eprintid SEPARATOR ' ') FROM eprint WHERE type =
> 'cartographic' AND eprint_status = 'archive';"
>
> so the command should be
>
> ./generate_abstracts digimap `mysql -u username -p repopassword
> eprints? -N -B? -e "SELECT GROUP_CONCAT(eprintid SEPARATOR ' ') FROM
> eprint WHERE type = 'cartographic' AND eprint_status = 'archive';"`
>
>
> Il 07/07/22 02:36, MOHD.IZWAN SALIM via Eprints-tech ha scritto:
>> Dear?Yuri and David, is this the exact command that I have to run in
>> the terminal?
>>
>> ./generate_abstracts digimap `mysql -u username -p repopassword
>> eprints -e "SELECT eprintid FROM eprint WHERE type = 'cartographic'
>> AND eprint_status = 'archive';" | tail -n +2`
>>
>> digimap is my repoid
>> eprints is my database
>>
>> *Izwan*
>> UiTM Institutional Repository
>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fir.uitm.edu.my%2F&data=05%7C01%7Ceprints-tech%40ecs.soton.ac.uk%7C54c97be4057f4fa7723408da5fe638d2%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637927739637584114%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=8PHX5VQcaEnTMQMzQL1sSI0kUa1cEDtqvNrfN9Qae8w%3D&reserved=0
>>
>>
>> On Wed, Jul 6, 2022 at 7:50 PM Yuri via Eprints-tech
>> <eprints-tech at ecs.soton.ac.uk> wrote:
>>
>> CAUTION: This e-mail originated outside the University of
>> Southampton.
>>
>> An idea could be to have a generic utils with a query parameter
>> in json
>> format, so a search is run with that query and the resulting
>> eprintids
>> used. For example:
>>
>> bin/find_eprintids <ARCHIVEID> -query '{"type": "conference_item",
>> "eprint_status": "archive"}' |? xargs bin/generate_abstracts
>> <ARCHIVEID>
>>
>> (dates could be expressed in iso format). The util 'find_eprintids'
>> would do:
>>
>> foreach $key (keys %fields)
>> {
>> ? $searchexp->add_field( $ds->get_field( $key ), $fields($key) );
>> }
>>
>> my $list = $searchexp->perform_search;
>>
>> and then return the eprintids from the list.
>>
>> This could help to combine together multiple search results in a
>> single
>> file, and cat the file | xargs bin/generate_abstracts <ARCHIVEID>.
>>
>> I usually use the db as below to get all the eprintids I need to
>> process
>> but an "eprints" search could be useful/simpler to use.
>>
>>
>> Il 06/07/22 10:48, David R Newman via Eprints-tech ha scritto:
>> >
>> > Hi Izwan,
>> >
>> > Unfortunately, there is not currently an easy way to do this bar
>> > writing your own script.? For the next release of EPrints I have
>> > expanded the epadmin scripts capabilities so all functions
>> where you
>> > could only provide a single eprint ID, you can now provide multiple
>> > eprint IDs or even a sequence of eprint IDs (e.g. 1-10 for the
>> first
>> > 10 eprint IDs).? What your email has meant I have realised is
>> that as
>> > generate_abstracts is a separate script, I have not introduced the
>> > same functionality to that.? I have just been working on fixing
>> that
>> > oversight and as it is a stand-alone script you should be able to
>> > download and use the latest version from here:
>> >
>> >
>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fraw.githubusercontent.com%2Feprints%2Feprints3.4%2Fmaster%2Fbin%2Fgenerate_abstracts&data=05%7C01%7Ceprints-tech%40ecs.soton.ac.uk%7C54c97be4057f4fa7723408da5fe638d2%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637927739637584114%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=nrTE%2B8cDwouTa9eJXlwdka9AgVMxHGNLRNEg%2F2Jpv8w%3D&reserved=0
>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fraw.githubusercontent.com%2Feprints%2Feprints3.4%2Fmaster%2Fbin%2Fgenerate_abstracts&data=05%7C01%7Ceprints-tech%40ecs.soton.ac.uk%7C54c97be4057f4fa7723408da5fe638d2%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637927739637584114%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=nrTE%2B8cDwouTa9eJXlwdka9AgVMxHGNLRNEg%2F2Jpv8w%3D&reserved=0>
>> >
>> > Although the script does not allow you to specify a type option you
>> > can do a little trick from the command line:
>> >
>> > bin/generate_abstracts <ARCHIVEID> `mysql -u <DBUSER>
>> -p<DBPASSWORD>
>> > <DBNAME> -e "SELECT eprintid FROM eprint WHERE type =
>> > 'conference_item' AND eprint_status = 'archive';" | tail -n +2`
>> >
>> > What this does is queries the database for all live archive
>> items of a
>> > particular eprint type (in this case conference_item) and
>> prints out
>> > this list of eprint IDs.? the "| tail -n +2" keeps everything
>> from the
>> > 2nd line onwards (i.e. removes the first line), as this
>> contains the
>> > name of the column (i.e. eprintid), which is not an eprint ID
>> in itself.
>> >
>> > Regards
>> >
>> > David Newman
>> >
>> > On 06/07/2022 6:15 am, MOHD.IZWAN SALIM via Eprints-tech wrote:
>> >> *CAUTION:* This e-mail originated outside the University of
>> Southampton.
>> >> Dear all, can we generate abstract pages by an option item type or
>> >> other metadata?
>> >>
>> >> Regards
>> >>
>> >> *Izwan*
>> >> UiTM Institutional Repository
>> >>
>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fir.uitm.edu.my%2F&data=05%7C01%7Ceprints-tech%40ecs.soton.ac.uk%7C54c97be4057f4fa7723408da5fe638d2%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637927739637584114%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=8PHX5VQcaEnTMQMzQL1sSI0kUa1cEDtqvNrfN9Qae8w%3D&reserved=0
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>> >>
>> >> *PENAFIAN: *E-mel ini dan apa-apa fail yang dihantar
>> bersama-samanya
>> >> ("Mesej") adalah dihasratkan hanya untuk kegunaan penerima yang
>> >> dinyatakan di atas dan mungkin mengandungi maklumat yang tidak
>> umum,
>> >> bermilik, istimewa, sulit dan dikecualikan dari penzahiran di
>> bawah
>> >> undang-undang yang terpakai termasuklah Akta Rahsia Rasmi
>> 1972. _BACA
>> >> SELANJUTNYA..._
>> >>
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>>
>>
>> *PENAFIAN: *E-mel ini dan apa-apa fail yang dihantar bersama-samanya
>> ("Mesej") adalah dihasratkan hanya untuk kegunaan penerima yang
>> dinyatakan di atas dan mungkin mengandungi maklumat yang tidak umum,
>> bermilik, istimewa, sulit dan dikecualikan dari penzahiran di bawah
>> undang-undang yang terpakai termasuklah Akta Rahsia Rasmi 1972. _BACA
>> SELANJUTNYA..._
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