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[EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities

Subject: [EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities
From: totl at soton.ac.uk (Christopher Gutteridge)
Date: Tue, 1 Dec 2020 15:07:28 +0000
In-reply-to: <EMEW3|64bc7f3151898ec58662b8bcc449fc8awB0EpM03drn|ecs.soton.ac.uk|e0bba1ea-30f9-4b41-d327-d44906234ab1@ecs.soton.ac.uk>
References: <20180830161544.0B998135D797@localhost> <CAAVv=LRSXjddB3M6ZHfWOMgYKbm8q9cez9evEbyNdRydhMbEZQ@mail.gmail.com> <84842409.399790.1605633809226@mail.vodafone.de> <880575761.176288.1606824032406@mail.vodafone.de> <880575761.176288.1606824032406@mail.vodafone.de> <EMEW3|d1ddd336236de133ca0033c05ce15024wB0C1p14eprints-tech-bounces|ecs.soton.ac.uk|880575761.176288.1606824032406@mail.vodafone.de> <948755b7-8823-8107-bc5c-8dd82a384a4d@ecs.soton.ac.uk> <EMEW3|23ce7e0c6cad94cb5dc6b1063adbdc5dwB0DLG03drn|ecs.soton.ac.uk|948755b7-8823-8107-bc5c-8dd82a384a4d@ecs.soton.ac.uk> <OF9927B075.76D5BD1D-ONC1258631.004A5761-C1258631.004AA3E1@lotus.uzh.ch> <c6c10e6d-f0d1-b7f8-3cd6-77cfb63768cb@ecs.soton.ac.uk> <OF8026049F.8CAB393B-ONC1258631.004F190F-C1258631.004F4CA6@lotus.uzh.ch> <e0bba1ea-30f9-4b41-d327-d44906234ab1@ecs.soton.ac.uk> <EMEW3|64bc7f3151898ec58662b8bcc449fc8awB0EpM03drn|ecs.soton.ac.uk|e0bba1ea-30f9-4b41-d327-d44906234ab1@ecs.soton.ac.uk> <5bbc265f-380f-20ab-b8f1-017315937acf@soton.ac.uk>

This was a bit of a fiddle to make it possible to do things like &pound; 
&eacute; etc.? to make people's lives a little easier when writing the 
templates which are XHTML.

The obvious other approach would be to preprocess them with something 
like this

s/&([a-z]+);/expandentitiy($1)/ge

but that would break with the wisdom that you should never parse XML 
with a regular expression.


On 01/12/2020 14:37, David R Newman via Eprints-tech wrote:
>
> Hi all,
>
> I have been blind.? EPrints (at least latest 3.4) already has an 
> entities.dtd in lib/ and is already used in most of the standard XML 
> template, phrase, etc. files.? I think the problem is that it does not 
> link in properly in most if not all cases. So I will investigate how 
> that can be done better to avoid encountering undefined entities errors.
>
> Regards
>
> David Newman
>
> On 01/12/2020 14:26, martin.braendle at uzh.ch wrote:
>> *CAUTION:* This e-mail originated outside the University of Southampton.
>>
>> The entities file we have here has the following preamble
>>
>> <!-- Portions (C) International Organization for Standardization 1986
>> ? ? ?Permission to copy in any form is granted for use with
>> ? ? ?conforming SGML systems and applications as defined in
>> ? ? ?ISO 8879, provided this notice is included in all copies.
>> -->
>>
>> and contains more than 500 lines.
>>
>> It stems most probably from here: 
>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.w3.org%2FTR%2FREC-html40-971218%2Fsgml%2Fentities.html&amp;data=04%7C01%7C%7C17ae8f455af14b1ad95b08d8960ad26b%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424320509770161%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&amp;sdata=2eHr8dRDRRDmGOYgfSZZ%2B6W1IhoNh3CaVd1rvc6fRsQ%3D&amp;reserved=0 
>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.w3.org%2FTR%2FREC-html40-971218%2Fsgml%2Fentities.html&amp;data=04%7C01%7C%7C17ae8f455af14b1ad95b08d8960ad26b%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424320509770161%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&amp;sdata=2eHr8dRDRRDmGOYgfSZZ%2B6W1IhoNh3CaVd1rvc6fRsQ%3D&amp;reserved=0>
>>
>> Kind regards,
>>
>> Martin
>>
>> --
>> Dr. Martin Br?ndle
>> Zentrale Informatik
>> Universit?t Z?rich
>> Stampfenbachstr. 73
>> CH-8006 Z?rich
>>
>> Inactive hide details for "David R Newman" ---01/12/2020 
>> 15:19:06---Hi all, EPrints 3.4 has has the patch applied for issues 
>> wi"David R Newman" ---01/12/2020 15:19:06---Hi all, EPrints 3.4 has 
>> has the patch applied for issues with newer versions of
>>
>> Von: "David R Newman" <drn at ecs.soton.ac.uk>
>> An: eprints-tech at ecs.soton.ac.uk
>> Kopie: th.lauke at arcor.de, martin.braendle at uzh.ch
>> Datum: 01/12/2020 15:19
>> Betreff: Re: Antwort: Re: [EP-tech] perl module update introduced 
>> some trouble with entities
>>
>> ------------------------------------------------------------------------
>>
>>
>>
>> Hi all,
>>
>> EPrints 3.4 has has the patch applied for issues with newer versions 
>> of LibXML and EPrints 3.4.2 onwards should have this particular issue 
>> resolved. ?Regarding special characters, I will look into producing 
>> (or hopefully finding) an entities.dtd for all the special characters 
>> that EPrints repositories may want use and then update standard 
>> template and phrase files to use this. ?In fact it is probably even 
>> worth doing this for citation and workflow files as well. ?I have 
>> created an issue for EPrints 3.4 to address this:
>>
>> _https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feprints%2Feprints3.4%2Fissues%2F112_&amp;data=04%7C01%7C%7C17ae8f455af14b1ad95b08d8960ad26b%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424320509780153%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&amp;sdata=ipUuBxXHIZLi%2BlQvZTpiXHutP%2FbeYmSY852uLjlFlEg%3D&amp;reserved=0 
>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feprints%2Feprints3.4%2Fissues%2F112&amp;data=04%7C01%7C%7C17ae8f455af14b1ad95b08d8960ad26b%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637424320509780153%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&amp;sdata=L4nlwbDYGg0apB4%2FoBivi%2FV2M2LVKNHF%2FORlO1jz6n0%3D&amp;reserved=0> 
>>
>>
>> Regards
>>
>> David Newman
>>
>> On 01/12/2020 13:35, _martin.braendle at uzh.ch_ 
>> <mailto:martin.braendle at uzh.ch>?wrote:
>>
>>     *CAUTION:*?This e-mail originated outside the University of
>>     Southampton.
>>
>>     Hi Thomas,
>>
>>     there should be ?an entities.dtd file in [eprints_root]/lib/,
>>     maybe this is missing or entries are missing in it?
>>
>>     Also a phrase file should mention that in the
>>
>>     <!DOCTYPE phrases SYSTEM "entities.dtd">
>>
>>     definition right at the beginning after the XML declaration.
>>
>>     Kind regards,
>>
>>     Martin
>>
>>     --
>>     Dr. Martin Br?ndle
>>     Zentrale Informatik
>>     Universit?t Z?rich
>>     Stampfenbachstr. 73
>>     CH-8006 Z?rich
>>
>>
>>     Inactive hide details for "David R Newman via Eprints-tech"
>>     ---01/12/2020 14:24:14---Hi Thomas, Named HTML entities are not
>>     sup"David R Newman via Eprints-tech" ---01/12/2020 14:24:14---Hi
>>     Thomas, Named HTML entities are not supported in XML you need to
>>     use the decimal
>>
>>     Von: "David R Newman via Eprints-tech"
>>     _<eprints-tech at ecs.soton.ac.uk>_
>>     <mailto:eprints-tech at ecs.soton.ac.uk>
>>     An: _<eprints-tech at ecs.soton.ac.uk>_
>>     <mailto:eprints-tech at ecs.soton.ac.uk>, _<th.lauke at arcor.de>_
>>     <mailto:th.lauke at arcor.de>
>>     Datum: 01/12/2020 14:24
>>     Betreff: Re: [EP-tech] perl module update introduced some trouble
>>     with entities
>>     Gesendet von: _<eprints-tech-bounces at ecs.soton.ac.uk>_
>>     <mailto:eprints-tech-bounces at ecs.soton.ac.uk>
>>
>>     ------------------------------------------------------------------------
>>
>>
>>
>>     Hi Thomas,
>>
>>     Named HTML entities are not supported in XML you need to use the
>>     decimal code XML entity for &auml; which is &#228;
>>
>>     This is the same as needing to replace things like &amp; and
>>     &copy; with their equivalent decimal code XML entities.
>>
>>     Regards
>>
>>     David Newman
>>
>>     On 01/12/2020 12:00, th.lauke--- via Eprints-tech wrote:
>>
>>
>>     CAUTION: This e-mail originated outside the University of
>>     Southampton.
>>
>>     Hi all,
>>
>>     any hint where to start digging for reason(s) after following error:
>>     Failed to parse XML file:
>>     /usr/share/eprints/site_lib/lang/en/phrases/modified.xml: Entity:
>>     line 226: parser error : Entity 'auml' not defined
>>
>>     This error occurs after updating some perl modules ... :(
>>
>>     Is the 'bad' module already known?
>>     What is more effective: Fixing the module (version) or the phrase
>>     file?
>>
>>     Thanks for any idea in advance
>>     Thomas
>>
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-- 
Christopher Gutteridge <totl at soton.ac.uk>
You should read our team blog at http://blog.soton.ac.uk/webteam/

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Follow-Ups:
- [EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities
  - From: totl at soton.ac.uk (Christopher Gutteridge)

References:
- [EP-tech] misconfigured or failed upgrade to 3.4.1?
  - From: th.lauke at arcor.de (th.lauke at arcor.de)
- [EP-tech] perl module update introduced some trouble with entities
  - From: th.lauke at arcor.de (th.lauke at arcor.de)
- [EP-tech] perl module update introduced some trouble with entities
  - From: drn at ecs.soton.ac.uk (David R Newman)
- [EP-tech] Antwort: Re: perl module update introduced some trouble with entities
  - From: martin.braendle at uzh.ch (martin.braendle at uzh.ch)
- [EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities
  - From: martin.braendle at uzh.ch (martin.braendle at uzh.ch)
- [EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities
  - From: drn at ecs.soton.ac.uk (David R Newman)
- [EP-tech] Antwort: Re: Antwort: Re: perl module update introduced some trouble with entities
  - From: totl at soton.ac.uk (Christopher Gutteridge)

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