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Re: [EP-tech] Migrating to Redhat Linux 8.6
- To: "eprints-tech@ecs.soton.ac.uk" <eprints-tech@ecs.soton.ac.uk>
- Subject: Re: [EP-tech] Migrating to Redhat Linux 8.6
- From: Andrew Mehta <A.J.Mehta@soton.ac.uk>
- Date: Fri, 22 Sep 2023 08:05:21 +0000
|
I believe in doing things properly, so I'll spin up a VM with Redhat 8.6 at some point today (or more likely this evening as it's looking like a busy day) and try and replicate what you're experiencing here.
You had no problem with the dnf perl bindings installation,
and only with the cpan installs,
from what I gather.
John's mentioning of version numbers reminds me - you can use cpan or cpanm to install specific versions of modules too.
If there's a known version that works well with your RedHat 8.6, you could ask cpan or cpanm to specifically install that version.
This is assuming I'm not confusing Perl Module versions with underlying lxslt versions.
I once had a problem running Alien::ImageMagick on an older version of CentOS, and found it was attempting to install a version of ImageMagick not compatible with my OS, so I just jumped into the part of the cpan module that specified
what version of ImageMagick to install, changed it to a last known working version, and that solved the problem, giving me a uniquely patched version of the cpan module to install to solve my particular issue.
Of course in this case, the error we're facing is it not being found. Which means there's a risk it could be there and working and just not being located.
Obviously I'm only speculating and could be completely wrong.
I'll replace hypothetical guessing with experience and results from trial and error,
when I get the VM going later today.
Of course, the problem could be something unique to your setup Maher, that I may not be able to initially replicate with a VM, and might be able to replicate with further communication with you. For now, I'll give it a go later today,
and see what I find, then I'll post back here and share any findings.
Feel free to experiment with other potential solutions in the meantime.
Or take a break if it's driving you potty ;-).
Yours,
Andrew.
From: eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
Sent: 22 September 2023 03:47 To: eprints-tech@ecs.soton.ac.uk <eprints-tech@ecs.soton.ac.uk> Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
Tried this command ./cpanm -l local https://github.com/shlomif/perl-XML-LibXSLT.git@master
But received the same error: cpanm (App::cpanminus) 1.7047 on perl 5.026003 built for x86_64-linux-thread-multi Work directory is /root/.cpanm/work/1695350723.167984 You have make /bin/make You have LWP 6.34 You have /bin/tar: tar (GNU tar) 1.30 Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
Written by John Gilmore and Jay Fenlason. You have /bin/unzip Cloning https://github.com/shlomif/perl-XML-LibXSLT.git Cloning into '/tmp/JDue8C3Kpl'... Already on 'master' Your branch is up to date with 'origin/master'. -> OK --> Working on https://github.com/shlomif/perl-XML-LibXSLT.git@master Entering /tmp/JDue8C3Kpl Configuring /tmp/JDue8C3Kpl Running Makefile.PL running pkg-config libxslt... ok looking for -lxslt... no libxslt not found Try setting LIBS and INC values on the command line Or get libxslt and libxml2 from http://www.libxml.org/ If you install via RPMs, make sure you also install the -devel RPMs, as this is where the headers (.h files) are. -> N/A -> FAIL Configure failed for https://github.com/shlomif/perl-XML-LibXSLT.git@master. See /root/.cpanm/work/1695350723.167984/build.log for details.
From: eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal We received the following error: [root@ sftp-gsadmissions-1 bin]# ./cpanm git: //github. com/shlomif/perl-XML-LibXSLT. git@ master ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
We received the following error: [root@sftp-gsadmissions-1 bin]# ./cpanm git://github.com/shlomif/perl-XML-LibXSLT.git@master Cloning git://github.com/shlomif/perl-XML-LibXSLT.git ... FAIL ! Failed cloning git repository git://github.com/shlomif/perl-XML-LibXSLT.git ! Couldn't find module or a distribution git://github.com/shlomif/perl-XML-LibXSLT.git@master
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. I meant you should try to download/install from GitHub, rather than via dnf or the CPAN archive. Newer ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. I meant you should try to download/install from GitHub, rather than via dnf or the CPAN archive. Newer versions of cpanm apparently allow you to do this (I've never tried this before!):
> cpanm git://github.com/shlomif/perl-XML-LibXSLT.git@master
Does that help at all?
I personally haven't tried running EPrints on RHEL8. Others might be able to answer that question.
Cheers, John
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Do you mean to download the xml-libxslt 1.96.6 and try to manually install it by running the makefile.pl ....?
Would appreciate if you have clear steps to try to resolve this issue.
Do you know if eprints has been successfully tested to run on redhat 8.6 or not?
-------- Original message -------- From: John Salter <J.Salter@leeds.ac.uk> Date: 9/21/23 9:28 PM (GMT+03:00) Subject: Re: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. There are quite a few changes from 1. 96. 6 (which I think is what RHEL provides from their repo) and ZjQcmQRYFpfptBannerStart Warning: This email has been sent from outside KFUPM. Do not open links or attachments unless you are sure they are safe.
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. There are quite a few changes from 1.96.6 (which I think is what RHEL provides from their repo) and 2.001001 (CPAN version).
Maybe try cloning the git repo for it, and following their instructions (I can't remember what the process is off the top of my head!).
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
We modified the Makefile.pl file as mentioned in the link, but running the perl Makefile.PL did not work as shown below:
[root@sftp-gsadmissions-1 XML-LibXSLT-2.002001]# perl Makefile.PL running pkg-config libxslt... ok looking for -lxslt... no libxslt not found Try setting LIBS and INC values on the command line Or get libxslt and libxml2 from If you install via RPMs, make sure you also install the -devel RPMs, as this is where the headers (.h files) are. [root@sftp-gsadmissions-1 XML-LibXSLT-2.002001]# ^C [root@sftp-gsadmissions-1 XML-LibXSLT-2.002001]# make make: *** No targets specified and no makefile found. Stop.
Are there any other modification required to be made in the Makefile.PL file? As it is still complaining that libxslt not found??
Thanks, Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal Where do I get the Makefile. pl file to modify it? After modifying it should I still use CPANM ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
Where do I get the Makefile.pl file to modify it?
After modifying it should I still use CPANM to install?
Please send the steps f possible.
Thanks, Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Whatever the problem is, it’s not obvious! This might be related: https: //github. com/shlomif/perl-XML-LibXSLT/issues/6 ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Whatever the problem is, it’s not obvious!
This might be related: https://github.com/shlomif/perl-XML-LibXSLT/issues/6
Does this update to the Makefile.pl help:
It doesn’t look like the above commit has made it to a release version yet – but I’m not sure why that would cause the CPAN route to fail, unless the CPAN and DNF are different version numbers…
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
We are not sure if installing the perl-XML-LibXSLT using dnf will cause any segmentation faults with our Apache httpd webserver or not. We are just following the recommendation in the documentation to install using CPAN.
Following is the cpanm –V output:
# ./cpanm -V cpanm (App::cpanminus) version 1.7047 (./cpanm) perl version 5.026003 (/usr/bin/perl)
%Config: archname=x86_64-linux-thread-multi installsitelib=/usr/local/share/perl5 installsitebin=/usr/local/bin installman1dir=/usr/share/man/man1 installman3dir=/usr/share/man/man3 sitearchexp=/usr/local/lib64/perl5 sitelibexp=/usr/local/share/perl5 vendorarch=/usr/lib64/perl5/vendor_perl vendorlibexp=/usr/share/perl5/vendor_perl archlibexp=/usr/lib64/perl5 privlibexp=/usr/share/perl5 %ENV: @INC: FatPacked::94715887577112=HASH(0x5624c2d56818) /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5
This is the content of the file “XML-LibXSLT-2.002001-0.yml” --- distribution: !!perl/hash:CPAN::Distribution CALLED_FOR: XML::LibXSLT CHECKSUM_STATUS: OK ID: S/SH/SHLOMIF/XML-LibXSLT-2.002001.tar.gz RO: CPAN_COMMENT: ~ CPAN_USERID: SHLOMIF archived: tar build_dir: /root/.local/share/.cpan/build/XML-LibXSLT-2.002001-0 incommandcolor: 1 localfile: /root/.local/share/.cpan/sources/authors/id/S/SH/SHLOMIF/XML-LibXSLT-2.002001.tar.gz mandatory: 1 negative_prefs_cache: 1 prefs: {} reqtype: c unwrapped: !!perl/hash:CPAN::Distrostatus COMMANDID: 1 FAILED: '' TEXT: YES TIME: 1695294479 writemakefile: !!perl/hash:CPAN::Distrostatus COMMANDID: 1 FAILED: 1 TEXT: "NO -- No 'Makefile' created\n" TIME: 1695294480 perl: $^X: /usr/bin/perl mtime_$^X: 1673971108 mtime_dll: 0 sitearchexp: /usr/local/lib64/perl5 time: 1695294480
Thank you for your support. Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Andrew Mehta
Is it a problem for your EPrints migration if perl-XML-LibXSLT is working fine for you? The CPAN install idea is only if you sometimes find the perl-XML-LibXSLT package causes segmentation faults with the Apache httpd webserver. You mention ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd Is it a problem for your EPrints migration if
The CPAN install idea is only if you sometimes find the perl-XML-LibXSLT package causes segmentation faults with the Apache httpd webserver.
cpanm -V ...showing the correct installation locations?
Is any further info in build logs in your user's home directory's ".cpanm" folder?
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
Sorry the libxslt is a folder (not a file) and is located here: /usr/include/libxslt
We also have the following libxslt files here: /usr/lib64/libxslt.so.1.1.32 /usr/lib64/libxslt-plugins /usr/lib64/libxslt.so.1 /usr/lib64/pkgconfig/libxslt.pc /usr/lib64/libxslt.so /usr/share/licenses/libxslt
The error appearing when trying to install using CPAN is this: looking for -lxslt... no libxslt not found
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any dependencies. Then we did a dnf remove perl-XML-LibXSLT and then a cpanm (Yes we are using cpanm) XML::LibXSLT but received the same error and the installation failed.
Could the issue be from the location of the libxslt file?
# which libxslt /usr/bin/which: no libxslt in (/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin)
The libxslt file is located here: /usr/include/libxslt Thanks Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Apologies, that previous ‘which’ wasn’t too helpful :\ If you try installing from RPM: >dnf install ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Apologies, that previous ‘which’ wasn’t too helpful :\ >dnf install perl-XML-LibXSLT
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
I’m using the root user for running the below command and for trying to install the CPAN module, this is the output:
# which libxslt /usr/bin/which: no libxslt in (/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin)
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. If you run: > which libxslt As the same user you are trying to install the CPAN module with, does ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. If you run: As the same user you are trying to install the CPAN module with, does it return anything?
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
Hi Martin
The packages libxslt-devel libxslt libxml2-devel libxml2 are only installed using dnf and are not installed again on the system using CPAN. As for the XML::LibXSLT it is recommended in the documentation to install it using CPAN and not as an rpm using dnf.
Any ideas?
Thanks, Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Martin Brändle
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Hi, if you have the rpms installed, you don’t need the CPAN package (you should remove it) – otherwise ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Hi,
if you have the rpms installed, you don’t need the CPAN package (you should remove it) – otherwise you may run into conflicts. Kind regards,
Martin
-- Dr. Martin Brändle
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
Sorry the libxslt is a folder (not a file) and is located here: /usr/include/libxslt
We also have the following libxslt files here: /usr/lib64/libxslt.so.1.1.32 /usr/lib64/libxslt-plugins /usr/lib64/libxslt.so.1 /usr/lib64/pkgconfig/libxslt.pc /usr/lib64/libxslt.so /usr/share/licenses/libxslt
The error appearing when trying to install using CPAN is this: looking for -lxslt... no libxslt not found
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal
We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any dependencies. Then we did a dnf remove perl-XML-LibXSLT and then a cpanm (Yes we are using cpanm) XML::LibXSLT but received the same error and the installation failed.
Could the issue be from the location of the libxslt file?
# which libxslt /usr/bin/which: no libxslt in (/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin)
The libxslt file is located here: /usr/include/libxslt Thanks Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Apologies, that previous ‘which’ wasn’t too helpful :\ If you try installing from RPM: >dnf install ZjQcmQRYFpfptBannerStart
ZjQcmQRYFpfptBannerEnd CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Apologies, that previous ‘which’ wasn’t too helpful :\ >dnf install perl-XML-LibXSLT
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