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[EP-tech] Import Items error - Pubmed XML



Hi all,

if I try to import a pubmed xml  paste data and uploading file occurs same 
error:
unexpected tag: expected <> found <PubmedArticleSet>

xml sample file attached.


settings: 
eprints r7487
opensuse 12.1 x86
kernel 3.2.9
apache2-prefork-2.2.21
apache2-mod_perl-2.0.5
mysql-community-server-5.5.16
perl-5.14.2
libxml2 2.7.8
perl-XML-LibXML 1.95
perl-libxml-perl 0.08


error_log:
 at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/XML/LibXML.pm 
line 877
    
XML::LibXML::parse_fh('XML::LibXML=HASH(0xba1043f8)', 'File::Temp=GLOB(0xba122d38)') 
called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/XML/LibXML/SAX.pm 
line 99
    eval {...} called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/XML/LibXML/SAX.pm 
line 98
    XML::LibXML::SAX::_parse('XML::LibXML::SAX=HASH(0xba12ed30)') called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/XML/LibXML/SAX.pm 
line 54
    
XML::LibXML::SAX::_parse_bytestream('XML::LibXML::SAX=HASH(0xba12ed30)', 'File::Temp=GLOB(0xba122d38)') 
called at /opt/eprints3/perl_lib/XML/SAX/Base.pm line 2602
    
XML::SAX::Base::parse('XML::LibXML::SAX=HASH(0xba12ed30)', 'HASH(0xba130008)') 
called at /opt/eprints3/perl_lib/XML/SAX/Base.pm line 2631
    
XML::SAX::Base::parse_file('XML::LibXML::SAX=HASH(0xba12ed30)', 'File::Temp=GLOB(0xba122d38)') 
called at /opt/eprints3/perl_lib/EPrints/XML/LibXML.pm line 131
    
EPrints::XML::event_parse('File::Temp=GLOB(0xba122d38)', 'EPrints::Plugin::Import::DefaultXML::DOMHandler=HASH(0xb7f0f5b0)') 
called at /opt/eprints3/perl_lib/EPrints/Plugin/Import/DefaultXML.pm line 81
    eval {...} called 
at /opt/eprints3/perl_lib/EPrints/Plugin/Import/DefaultXML.pm line 81
    
EPrints::Plugin::Import::DefaultXML::input_fh('EPrints::Plugin::Import::PubMedXML=HASH(0xba1306b8)', 'dataset', 'EPrints::DataSet=HASH(0xb8b91860)', 'fh', 'File::Temp=GLOB(0xba122d38)', 'user', 'EPrints::DataObj::User=HASH(0xba128c20)', 'filename', 
undef, ...) called at /opt/eprints3/perl_lib/EPrints/Plugin/Screen/Import.pm 
line 298
    eval {...} called 
at /opt/eprints3/perl_lib/EPrints/Plugin/Screen/Import.pm line 297
    
EPrints::Plugin::Screen::Import::run_import('EPrints::Plugin::Screen::Import=HASH(0xba11ed80)', 
1, 0, 'File::Temp=GLOB(0xba122d38)') called 
at /opt/eprints3/perl_lib/EPrints/Plugin/Screen/Import.pm line 146
    
EPrints::Plugin::Screen::Import::action_test_data('EPrints::Plugin::Screen::Import=HASH(0xba11ed80)') 
called at /opt/eprints3/perl_lib/EPrints/Plugin/Screen.pm line 240
    
EPrints::Plugin::Screen::from('EPrints::Plugin::Screen::Import=HASH(0xba11ed80)') 
called at /opt/eprints3/perl_lib/EPrints/ScreenProcessor.pm line 310
    
EPrints::ScreenProcessor::process('EPrints::ScreenProcessor', 'session', 'EPrints::Repository=HASH(0xb9dfcef0)', 'template', 
undef, 'url', '/cgi/users/home') called at /opt/eprints3/cgi/users/home line 
40
    
ModPerl::ROOT::ModPerl::Registry::opt_eprints3_cgi_users_home::handler('Apache2::RequestRec=SCALAR(0xb9ba57a8)') 
called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/RegistryCooker.pm 
line 204
    eval {...} called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/RegistryCooker.pm 
line 204
    ModPerl::RegistryCooker::run('ModPerl::Registry=HASH(0xb9acc980)') called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/RegistryCooker.pm 
line 170
    
ModPerl::RegistryCooker::default_handler('ModPerl::Registry=HASH(0xb9acc980)') 
called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/Registry.pm 
line 31
    
ModPerl::Registry::handler('ModPerl::Registry', 'Apache2::RequestRec=SCALAR(0xb9ba57a8)') 
called at -e line 0
    eval {...} called at -e line 0
 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/XML/LibXML/SAX.pm 
line 109
    XML::LibXML::SAX::_parse('XML::LibXML::SAX=HASH(0xba12ed30)') called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/XML/LibXML/SAX.pm 
line 54
    
XML::LibXML::SAX::_parse_bytestream('XML::LibXML::SAX=HASH(0xba12ed30)', 'File::Temp=GLOB(0xba122d38)') 
called at /opt/eprints3/perl_lib/XML/SAX/Base.pm line 2602
    
XML::SAX::Base::parse('XML::LibXML::SAX=HASH(0xba12ed30)', 'HASH(0xba130008)') 
called at /opt/eprints3/perl_lib/XML/SAX/Base.pm line 2631
    
XML::SAX::Base::parse_file('XML::LibXML::SAX=HASH(0xba12ed30)', 'File::Temp=GLOB(0xba122d38)') 
called at /opt/eprints3/perl_lib/EPrints/XML/LibXML.pm line 131
    
EPrints::XML::event_parse('File::Temp=GLOB(0xba122d38)', 'EPrints::Plugin::Import::DefaultXML::DOMHandler=HASH(0xb7f0f5b0)') 
called at /opt/eprints3/perl_lib/EPrints/Plugin/Import/DefaultXML.pm line 81
    eval {...} called 
at /opt/eprints3/perl_lib/EPrints/Plugin/Import/DefaultXML.pm line 81
    
EPrints::Plugin::Import::DefaultXML::input_fh('EPrints::Plugin::Import::PubMedXML=HASH(0xba1306b8)', 'dataset', 'EPrints::DataSet=HASH(0xb8b91860)', 'fh', 'File::Temp=GLOB(0xba122d38)', 'user', 'EPrints::DataObj::User=HASH(0xba128c20)', 'filename', 
undef, ...) called at /opt/eprints3/perl_lib/EPrints/Plugin/Screen/Import.pm 
line 298
    eval {...} called 
at /opt/eprints3/perl_lib/EPrints/Plugin/Screen/Import.pm line 297
    
EPrints::Plugin::Screen::Import::run_import('EPrints::Plugin::Screen::Import=HASH(0xba11ed80)', 
1, 0, 'File::Temp=GLOB(0xba122d38)') called 
at /opt/eprints3/perl_lib/EPrints/Plugin/Screen/Import.pm line 146
    
EPrints::Plugin::Screen::Import::action_test_data('EPrints::Plugin::Screen::Import=HASH(0xba11ed80)') 
called at /opt/eprints3/perl_lib/EPrints/Plugin/Screen.pm line 240
    
EPrints::Plugin::Screen::from('EPrints::Plugin::Screen::Import=HASH(0xba11ed80)') 
called at /opt/eprints3/perl_lib/EPrints/ScreenProcessor.pm line 310
    
EPrints::ScreenProcessor::process('EPrints::ScreenProcessor', 'session', 'EPrints::Repository=HASH(0xb9dfcef0)', 'template', 
undef, 'url', '/cgi/users/home') called at /opt/eprints3/cgi/users/home line 
40
    
ModPerl::ROOT::ModPerl::Registry::opt_eprints3_cgi_users_home::handler('Apache2::RequestRec=SCALAR(0xb9ba57a8)') 
called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/RegistryCooker.pm 
line 204
    eval {...} called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/RegistryCooker.pm 
line 204
    ModPerl::RegistryCooker::run('ModPerl::Registry=HASH(0xb9acc980)') called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/RegistryCooker.pm 
line 170
    
ModPerl::RegistryCooker::default_handler('ModPerl::Registry=HASH(0xb9acc980)') 
called 
at /usr/lib/perl5/vendor_perl/5.14.2/i586-linux-thread-multi/ModPerl/Registry.pm 
line 31
    
ModPerl::Registry::handler('ModPerl::Registry', 'Apache2::RequestRec=SCALAR(0xb9ba57a8)') 
called at -e line 0
    eval {...} called at -e line 0



best regards
ulf
-- 
OntoChem GmbH
Heinrich-Damerow-Str. 4
06120 Halle (Saale)
Germany
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