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Re: [EP-tech] pubmed import AND explain_sql_tables

From: Andrea Merkle <Andrea.Merkle AT unibas.ch>
Date: Tue, 20 May 2008 16:53:30 +0200


Threading: [EP-tech] pubmed import AND explain_sql_tables from Andrea.Merkle AT unibas.ch
      • This Message

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Hi Tim,

thank you for your immediate answer. Response inline

> PubMedID is a simple wrapper around PubMedXML that retrieves the XML
> using the PubMed Web interface and passes it to the PubMedXML plugin. If
> the record isn't in PubMed or can't be found by it's identifier then you
> will have to use another method!

So PM PubMedID must get file of IDs? Or could one by some means or other 
alternatively  download direct?

> 
>> I. The output of bin/explain_sql_tables seems not really up to date 
>> compared to tables I actually see. Or is there a mistake on my side?
> 
> Yer, explain_sql_tables is a bit of out of date. In 3.1 it's been
> replaced by a new screen on the Admin page that provides more up to date
> information.
> 
> Which tables do you want to know about?

Primarily I intended to get a general overview. But e.g. I was looking 
for the coherence of tables eprint and document, the update of table 
user_saved_searches.

all the best,

Andrea



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